PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.34SQ4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 428aa    MW: 45588.2 Da    PI: 8.6146
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.34SQ4genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.2e-05195217223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                   C+ Cg++F+  ++L+ H+ + H
  Araip.34SQ4 195 ACSQCGEVFPKMESLELHQAVrH 217
                  6******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.85194218IPR007087Zinc finger, C2H2
PROSITE patternPS000280194217IPR007087Zinc finger, C2H2
SuperFamilySSF563995.76E-24219424No hitNo description
Gene3DG3DSA:3.90.228.104.4E-13223424IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MALLALLPEH SLPNNNNGSR VHDPSASKST MGSSCSSICS FRDVVHGNTR VVHRADNSSP  60
ESSSLGQQET GLLSRKPAAK SSRRSSSSSS GKSNGGATYT PSSSRGMQFR KLSGCYESLL  120
PEHSLPNNNN GSRVHDPSAS KSTMGSSCSS ICSFRDVVHG NTRIELRADN SSPESSSLGQ  180
QETGLLPIPR SSVCACSQCG EVFPKMESLE LHQAVRHAVW ELGPEDSGRN IVEIIFKSSW  240
LKKDNSICKI ERILKVQNSQ RTIQRFEECR DSVKSRAQNS SKKNPRCAAD GNELLRFHCT  300
TLTCPLGAQG STALCTAIPG CGVCTVIRHG FQGGGKGVKT TASSGRAHDS LAGHCGAPRA  360
MLVCRVIAGR VRRVPEDAPP EDDGVSASGG YDSFAGSAGI YSNLEELVVF NPRAILPCFV  420
VVYKVLSC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015969843.10.0PREDICTED: uncharacterized protein LOC107493257
TrEMBLA0A067KPI91e-153A0A067KPI9_JATCU; Uncharacterized protein
STRINGPOPTR_0005s25950.11e-145(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103413037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-113C2H2-like zinc finger protein